PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g12780.2
Common NameLR48_Vigan10g089600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 1099aa    MW: 123008 Da    PI: 9.4038
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g12780.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.9e-1068104341
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                       W++eE e++++a +++G++ Wk++a  +  +Rt +++ 
   Vang06g12780.2  68 QWSKEELERFYEAYRMYGKD-WKKVAGVVR-NRTTEMVE 104
                      6*****************99.*********.***99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.19E-1163112IPR009057Homeodomain-like
PROSITE profilePS5129312.38664115IPR017884SANT domain
SMARTSM007177.3E-665113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-568108IPR009057Homeodomain-like
PfamPF002491.5E-868108IPR001005SANT/Myb domain
CDDcd001676.74E-669103No hitNo description
SMARTSM011356.1E-52597698IPR033471DIRP domain
PfamPF065844.2E-30597697IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1099 aa     Download sequence    Send to blast
LLLSFSSSSI VLQRNRNPMR GGSMAPTRKS RSVNKRISST NDSPEKDGVN PNKNKQRKKK  60
LTDKLGSQWS KEELERFYEA YRMYGKDWKK VAGVVRNRTT EMVEALYNMN RREKVQLSVS  120
KDQSHSIAAS DGCLSLLKKR RLDGMVPHAV GKRTPRVPVS YSYKKEYTEN YVSPYRRSLK  180
STTDANDDEV AHVVALALTE AAQRGGGSPQ VSQSPCRRAD QKPSPVLRWE RKQQLSETAR  240
AKLHNLSVDE ELLDGSIESR GADNGEYARD NSSLIDMEGT GTVEVLQKGG KFYRKKERVK  300
NVGNHQLDDG GEACSGTEEG LSCSLKEMVD IEVTNEKLEK FSPKGGRKRN KKLFFGDETP  360
ALNALQTLAD LSLMMPISTV DSESSIQLKG DRISADKDGK SALPEATLTS HKRHKLKHSV  420
VPEIEVSTSK KSKLGKESTK DTNVLSESKE QLPFADATWK RKRKSVVANA KLDSCPSGPL  480
KDEALDDEKK PVVKGKHGDQ VFTLPKQLKT VKSSESSLCI DQKETGPMAE IPLLNEVSLP  540
TKRSRRKMNL QRTFSAKEKS SDSILKSQAN KHSDLKEKLS SCLSSNMVRR WFIFEWFYSA  600
IDYPWFAKRE LMEYLNHVGL GNIPRLTRVE WSVVRGSLGK PRRLSEHFLR DERQKLAEYR  660
ESVRKHYAEL RTGIRDGLPT DLARPLCVGQ RVIAIHPKTR EIHDGSVLTV DYDKCRIQFD  720
RPELGVEFVM DIDCMPFNPL DNMPEALRRH IDDRKGSFMP IEPHINGNSH FGGCENHSSP  780
LKVHTSSSAL VMHGKATVAT MDNLCAQAGC VQPCKVTHHQ AREADIHALS ELKRALDKKE  840
TLLMELRSSN SDILENQNGI ECLNDSEVFK KHYATVSDAM LQLRQRNTYR GNSLPPWMKP  900
QTGFSVHDDL PSMLDGSLTQ EFGSTVVQII KGSRSRAHAM VDAAFKALTL TKEGEDGFVK  960
IGQALDSINH QQLASKSRLP VIRSQEQVNA NGSFYHVNNS TCSVSESITN DPSGAKLHNY  1020
SEKFDTELPS DLITSCVATL IMIQTCTERQ YPPADVAQIL DSAVSSLHPC CPQNLPIYRE  1080
IQMCMGRIKT QILALIPT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345352GRKRNKKL
2540547TKRSRRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514043.10.0PREDICTED: protein ALWAYS EARLY 2-like isoform X3
TrEMBLA0A0L9VJY20.0A0A0L9VJY2_PHAAN; Uncharacterized protein
STRINGGLYMA20G37826.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]